If all you have done is replace the engine, then you shouldn't need to do any reprogramming.
There must be more to his comments, Is there any codes reported?
Did you make sure any connections have been replaced/re-fitted correctly?
What tool did he use with the computer?
If its re-programming then Vauxhall dealer will be able to do this. Not sure on what they would charge on-top of a "diagnostics" ( which is usually around £90 ) to re-program possibly later firmware into the ECU..
See if you can get more clarification on what the fault was.. just to say that the ECU is not responding doesn't help much.. Depending on the tool he had he could test other things like Fuel pump, injectors etc.. but a dead ecu??
re-check the work that you have done and all cables.. I assume the car is cranking and just not starting?
I would also be looking to make sure that you have bleed the fuel lines correctly and fully.
As you have replaced the engine then you are also looking at extended cranking time ( more that your battery will be able to do before going flat, so a starter pack will be needed or a recharge and try again ) initially just to get the fuel back through the fuel pump and into the injectors..
The Diesels just need fuel and air, there is no spark to worry about.
Also I would check the timing of the engine to the fuel pump.. did you confirm this was correct on re-fitting as the fuel pump is also required to be timed to the engine to put the fuel into the block at the right time.